Companion software and material to the paper
"Ordering of omics features using Beta distributions on Montecarlo p-values"
The package OMICfpp2 needs many other packages, some of them hosted by bioconductor.
If you have no bioconductor installed, proceed to Step 1. Otherwise, go directly to Step 2.
Step 1:
Being root (or a user authorized to write in /usr/lib64/R/library) load R and execute:
TIPO = "TODO"; source("http://johnford.uv.es/BetaMontecarlo/AllTami.R")
This may take a very long time.
Step 2:
Later, also from the R console with appropriate privileges, install two private packages called tamidata and tami (in that order):
install.packages("http://johnford.uv.es/BetaMontecarlo/tamidata_0.5.tar.gz",repos= NULL,type="source")
install.packages("http://johnford.uv.es/BetaMontecarlo/tami_0.9.tar.gz",repos= NULL,type="source")
and finally, install the OMICfpp2 package itself:
install.packages("http://johnford.uv.es/BetaMontecarlo/OMICfpp2_1.0.tar.gz",repos= NULL,type="source")
If you have started in Step 2, you might still get a message asking for missing dependencies
(other packages). In such a case, open and R console and do
install.packages("package_name") for each one
and try to install OMICfpp2 again.
Additional material
The additional files mentioned in the paper can be downloaded from here:
File SupplementaryMaterialAddons
File SupplementaryMaterialData
File SupplementaryMaterialMethods
File fun-BetaMonteCarlo20.R